Index

A

A_K_HATS (cnwheat.parameters.RootsParameters attribute) A_LATS (cnwheat.parameters.RootsParameters attribute) A_VMAX_HATS (cnwheat.parameters.RootsParameters attribute) Ag (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) age_from_flowering (cnwheat.model.Grains attribute) (cnwheat.parameters.GrainsInitCompartments attribute) ALL_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) ALPHA (cnwheat.parameters.AxisParameters attribute) (cnwheat.parameters.ChaffElementParameters attribute) (cnwheat.parameters.GrainsParameters attribute) (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.InternodeElementParameters attribute) (cnwheat.parameters.LaminaElementParameters attribute) (cnwheat.parameters.PeduncleElementParameters attribute) (cnwheat.parameters.PhloemParameters attribute) (cnwheat.parameters.RootsParameters attribute) (cnwheat.parameters.SheathElementParameters attribute) amino_acids (cnwheat.model.HiddenZone attribute) (cnwheat.model.Phloem attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) (cnwheat.parameters.HiddenZoneInitCompartments attribute) (cnwheat.parameters.PhloemInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute)

AMINO_ACIDS_C_RATIO (cnwheat.model.EcophysiologicalConstants attribute) Amino_Acids_import (cnwheat.model.PhotosyntheticOrganElement attribute) AMINO_ACIDS_MOLAR_MASS_C_RATIO (cnwheat.model.EcophysiologicalConstants attribute) AMINO_ACIDS_MOLAR_MASS_N_RATIO (cnwheat.model.EcophysiologicalConstants attribute) (cnwheat.model.Grains attribute) AMINO_ACIDS_N_RATIO (cnwheat.model.EcophysiologicalConstants attribute) Arrhenius_ref (cnwheat.parameters.GrainsParameters attribute) axes (cnwheat.model.Plant attribute) AXES_FLUXES (cnwheat.simulation.Simulation attribute) AXES_INDEXES (cnwheat.simulation.Simulation attribute) AXES_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) AXES_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute) AXES_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) AXES_STATE (cnwheat.simulation.Simulation attribute) AXES_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) AXES_T_INDEXES (cnwheat.simulation.Simulation attribute) AXES_VARIABLES (in module cnwheat.converter) Axis (class in cnwheat.model) AXIS_INIT_COMPARTMENTS (in module cnwheat.parameters) AXIS_PARAMETERS (in module cnwheat.parameters) AxisInitCompartments (class in cnwheat.parameters) AxisParameters (class in cnwheat.parameters)

B

B_K_HATS (cnwheat.parameters.RootsParameters attribute) B_LATS (cnwheat.parameters.RootsParameters attribute) B_VMAX_HATS (cnwheat.parameters.RootsParameters attribute) bar_length (cnwheat.tools.ProgressBar attribute)

BETA (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) (cnwheat.parameters.RootsParameters attribute) block_character (cnwheat.tools.ProgressBar attribute) block_interval (cnwheat.tools.ProgressBar attribute)

C

C_exudated (cnwheat.parameters.AxisInitCompartments attribute) C_exudation (cnwheat.model.Roots attribute) C_EXUDATION (cnwheat.parameters.RootsParameters attribute) C_MOLAR_MASS (cnwheat.model.EcophysiologicalConstants attribute) calculate_aggregated_variables() (cnwheat.model.Axis method) (cnwheat.model.HiddenZone method) (cnwheat.model.Organ method) (cnwheat.model.PhotosyntheticOrgan method) (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Phytomer method) (cnwheat.model.Plant method) (cnwheat.model.Population method) (cnwheat.model.Roots method) calculate_amino_acids_derivative() (cnwheat.model.HiddenZone method) (cnwheat.model.Phloem static method) (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Roots method) calculate_Amino_Acids_import() (cnwheat.model.PhotosyntheticOrganElement static method) calculate_C_exudated() (cnwheat.model.Axis static method) calculate_Conc_Nitrates() (cnwheat.model.Soil method) calculate_cytokinins_derivative() (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Roots method) calculate_cytokinins_import() (cnwheat.model.PhotosyntheticOrganElement static method) calculate_D_cytokinins() (cnwheat.model.PhotosyntheticOrganElement method) calculate_D_Fructan() (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_D_Proteins() (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_D_Starch() (cnwheat.model.PhotosyntheticOrganElement method) calculate_Export_Amino_Acids() (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Roots method) calculate_Export_cytokinins() (cnwheat.model.Roots method) calculate_Export_Nitrates() (cnwheat.model.Roots method) calculate_export_sucrose() (cnwheat.model.PhotosyntheticOrganElement method) calculate_exudation() (cnwheat.model.Roots static method) calculate_fructan_derivative() (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_Loading_Amino_Acids() (cnwheat.model.PhotosyntheticOrganElement method) calculate_Loading_Sucrose() (cnwheat.model.PhotosyntheticOrganElement method) calculate_mineralisation() (cnwheat.model.Soil static method) calculate_nitrates_derivative() (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Roots method) (cnwheat.model.Soil static method) calculate_Nitrates_import() (cnwheat.model.PhotosyntheticOrganElement static method) calculate_proteins_derivative() (cnwheat.model.Grains static method) (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_Regul_S_Fructan() (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_regul_transpiration() (cnwheat.model.Roots static method) calculate_RGR_Structure() (cnwheat.model.Grains static method) calculate_S_amino_acids() (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Roots method) calculate_S_cytokinins() (cnwheat.model.Roots method) calculate_S_Fructan() (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_S_grain_starch() (cnwheat.model.Grains method) calculate_S_grain_structure() (cnwheat.model.Grains method)

calculate_S_proteins() (cnwheat.model.Grains static method) (cnwheat.model.HiddenZone method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_S_Starch() (cnwheat.model.PhotosyntheticOrganElement method) calculate_S_Sucrose() (cnwheat.model.PhotosyntheticOrganElement method) calculate_starch_derivative() (cnwheat.model.Grains static method) (cnwheat.model.PhotosyntheticOrganElement method) calculate_structural_dry_mass() (cnwheat.model.Grains static method) calculate_structure_derivative() (cnwheat.model.Grains static method) calculate_sucrose_derivative() (cnwheat.model.HiddenZone method) (cnwheat.model.Phloem static method) (cnwheat.model.PhotosyntheticOrganElement method) (cnwheat.model.Roots method) calculate_temperature_effect_on_conductivity() (cnwheat.model.Plant static method) (cnwheat.model.Soil static method) calculate_temperature_effect_on_growth() (cnwheat.model.Grains method) calculate_temperature_effect_on_Vmax() (cnwheat.model.Plant static method) (cnwheat.model.Soil static method) calculate_Total_Organic_Nitrogen() (cnwheat.model.HiddenZone static method) (cnwheat.model.PhotosyntheticOrganElement static method) (cnwheat.model.Roots static method) calculate_total_Photosynthesis() (cnwheat.model.PhotosyntheticOrganElement static method) calculate_Total_Transpiration() (cnwheat.model.PhotosyntheticOrganElement static method) calculate_triosesP_derivative() (cnwheat.model.PhotosyntheticOrganElement method) calculate_Unloading_Amino_Acids() (cnwheat.model.HiddenZone method) (cnwheat.model.Roots static method) calculate_Unloading_Sucrose() (cnwheat.model.HiddenZone method) (cnwheat.model.Roots method) calculate_Uptake_Nitrates() (cnwheat.model.Roots method) Chaff (class in cnwheat.model) chaff (cnwheat.model.Phytomer attribute) CHAFF_ELEMENT_PARAMETERS (in module cnwheat.parameters) CHAFF_PARAMETERS (in module cnwheat.parameters) ChaffElement (class in cnwheat.model) ChaffElementParameters (class in cnwheat.parameters) ChaffParameters (class in cnwheat.parameters) cnwheat (module), [1] cnwheat.converter (module) cnwheat.model (module) cnwheat.parameters (module) cnwheat.simulation (module) cnwheat.tools (module) CNWHEAT_CLASSES_TO_DATAFRAME_ORGANS_MAPPING (in module cnwheat.converter) cohorts (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) (cnwheat.model.Plant attribute) cohorts_replications (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) compare_actual_to_desired() (in module cnwheat.tools) Conc_Nitrates_Soil (cnwheat.model.Soil attribute) constant_Conc_Nitrates (cnwheat.model.Soil attribute) culm_density (cnwheat.simulation.Simulation attribute) cytokinins (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute) cytokinins_import (cnwheat.model.PhotosyntheticOrganElement attribute)

D

D_cytokinins (cnwheat.model.PhotosyntheticOrganElement attribute) D_Fructan (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) D_Proteins (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) D_Starch (cnwheat.model.PhotosyntheticOrganElement attribute)

DATAFRAME_TO_CNWHEAT_ELEMENTS_NAMES_MAPPING (in module cnwheat.converter) DataWarning DELTA_D_CYTOKININS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) delta_Dproteins (cnwheat.parameters.HiddenZoneParameters attribute) DELTA_DSTARCH (cnwheat.parameters.PhotosyntheticOrganParameters attribute) delta_t (cnwheat.simulation.Simulation attribute)

E

EcophysiologicalConstants (class in cnwheat.model) ELEMENTS_FLUXES (cnwheat.simulation.Simulation attribute) ELEMENTS_FORCINGS (cnwheat.simulation.Simulation attribute) ELEMENTS_INDEXES (cnwheat.simulation.Simulation attribute) ELEMENTS_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) ELEMENTS_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute) ELEMENTS_PHOTOSYNTHESIS_FORCINGS (cnwheat.simulation.Simulation attribute) ELEMENTS_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) ELEMENTS_SENESCENCE_FORCINGS (cnwheat.simulation.Simulation attribute)

ELEMENTS_STATE (cnwheat.simulation.Simulation attribute) ELEMENTS_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) ELEMENTS_T_INDEXES (cnwheat.simulation.Simulation attribute) ELEMENTS_VARIABLES (in module cnwheat.converter) enclosed_element (cnwheat.model.PhotosyntheticOrgan attribute) Export_Amino_Acids (cnwheat.model.Roots attribute) Export_cytokinins (cnwheat.model.Roots attribute) Export_Nitrates (cnwheat.model.Roots attribute) exposed_element (cnwheat.model.PhotosyntheticOrgan attribute)

F

FILLING_END (cnwheat.parameters.GrainsParameters attribute) FILLING_INIT (cnwheat.parameters.GrainsParameters attribute) from_dataframe() (in module cnwheat.parameters) from_dataframes() (in module cnwheat.converter)

fructan (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.HiddenZoneInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute)

G

Grains (class in cnwheat.model) grains (cnwheat.model.Axis attribute) GRAINS_INIT_COMPARTMENTS (in module cnwheat.parameters) GRAINS_PARAMETERS (in module cnwheat.parameters)

GrainsInitCompartments (class in cnwheat.parameters) GrainsParameters (class in cnwheat.parameters) green_area (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute)

H

HATS_LATS (cnwheat.model.Roots attribute) HEXOSE_MOLAR_MASS_C_RATIO (cnwheat.model.EcophysiologicalConstants attribute) HIDDEN_ZONE_INIT_COMPARTMENTS (in module cnwheat.parameters) HIDDEN_ZONE_PARAMETERS (in module cnwheat.parameters) HiddenZone (class in cnwheat.model) hiddenzone (cnwheat.model.Phytomer attribute) HIDDENZONE_FLUXES (cnwheat.simulation.Simulation attribute) HIDDENZONE_INDEXES (cnwheat.simulation.Simulation attribute)

HIDDENZONE_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) HIDDENZONE_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute) HIDDENZONE_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) HIDDENZONE_STATE (cnwheat.simulation.Simulation attribute) HIDDENZONE_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) HIDDENZONE_T_INDEXES (cnwheat.simulation.Simulation attribute) HIDDENZONE_VARIABLES (in module cnwheat.converter) HiddenZoneInitCompartments (class in cnwheat.parameters) HiddenZoneParameters (class in cnwheat.parameters)

I

index (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) (cnwheat.model.Plant attribute) INIT_COMPARTMENTS (cnwheat.model.Axis attribute) (cnwheat.model.Grains attribute) (cnwheat.model.HiddenZone attribute) (cnwheat.model.Phloem attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) initial_conditions (cnwheat.simulation.Simulation attribute) initial_conditions_mapping (cnwheat.simulation.Simulation attribute) initialize() (cnwheat.model.Grains method) (cnwheat.model.Organ method) (cnwheat.simulation.Simulation method)

Internode (class in cnwheat.model) internode (cnwheat.model.Phytomer attribute) INTERNODE_ELEMENT_PARAMETERS (in module cnwheat.parameters) INTERNODE_PARAMETERS (in module cnwheat.parameters) InternodeElement (class in cnwheat.model) InternodeElementParameters (class in cnwheat.parameters) InternodeParameters (class in cnwheat.parameters) interpolate_forcings (cnwheat.simulation.Simulation attribute) interpolation_functions (cnwheat.simulation.Simulation attribute) is_growing (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute)

K

K_AMINO_ACIDS_EXPORT (cnwheat.parameters.RootsParameters attribute) K_AMINO_ACIDS_NITRATES (cnwheat.parameters.PhotosyntheticOrganParameters attribute) (cnwheat.parameters.RootsParameters attribute) K_AMINO_ACIDS_SUCROSE (cnwheat.parameters.RootsParameters attribute) K_AMINO_ACIDS_TRIOSESP (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_C (cnwheat.parameters.RootsParameters attribute) K_CYTOKININS_EXPORT (cnwheat.parameters.RootsParameters attribute) K_DFRUCTAN (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_DPROTEINS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_DPROTEINS_CYTOK (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_NITRATE_EXPORT (cnwheat.parameters.RootsParameters attribute)

K_NITRATES_CYTOKININS (cnwheat.parameters.RootsParameters attribute) K_REGUL_SFRUCTAN (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_RGR (cnwheat.parameters.GrainsParameters attribute) K_SFRUCTAN (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_SPROTEINS (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_STARCH (cnwheat.parameters.GrainsParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_SUCROSE (cnwheat.parameters.PhotosyntheticOrganParameters attribute) K_SUCROSE_CYTOKININS (cnwheat.parameters.RootsParameters attribute)

L

label (cnwheat.model.Axis attribute) (cnwheat.model.Organ attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) Lamina (class in cnwheat.model) lamina (cnwheat.model.Phytomer attribute) LAMINA_ELEMENT_PARAMETERS (in module cnwheat.parameters) LAMINA_PARAMETERS (in module cnwheat.parameters)

LaminaElement (class in cnwheat.model) LaminaElementParameters (class in cnwheat.parameters) LaminaParameters (class in cnwheat.parameters) last_upper_t (cnwheat.tools.ProgressBar attribute) Loading_Amino_Acids (cnwheat.model.PhotosyntheticOrganElement attribute) Loading_Sucrose (cnwheat.model.PhotosyntheticOrganElement attribute) LOGGERS_NAMES (cnwheat.simulation.Simulation attribute)

M

MIN_INFLUX_FOR_UPTAKE (cnwheat.parameters.RootsParameters attribute) mineralisation (cnwheat.model.Soil attribute) MODEL_COMPARTMENTS_NAMES (cnwheat.simulation.Simulation attribute) modified_Arrhenius_equation() (cnwheat.model.Grains static method) mstruct (cnwheat.model.Axis attribute) (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrgan attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) (cnwheat.model.Roots attribute) (cnwheat.parameters.HiddenZoneInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute)

N

N_DPROTEINS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) N_exudation (cnwheat.model.Roots attribute) N_EXUDATION_MAX (cnwheat.parameters.RootsParameters attribute) N_MOLAR_MASS (cnwheat.model.EcophysiologicalConstants attribute) N_NIT_CYTOKININS (cnwheat.parameters.RootsParameters attribute) N_REGUL_SFRUCTAN (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) N_SUC_CYTOKININS (cnwheat.parameters.RootsParameters attribute) NB_C_HEXOSES (cnwheat.model.EcophysiologicalConstants attribute) NB_C_SUCROSE (cnwheat.model.EcophysiologicalConstants attribute) NB_C_TRIOSEP (cnwheat.model.EcophysiologicalConstants attribute) nb_replications (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) NET_INFLUX_UPTAKE_RATIO (cnwheat.parameters.RootsParameters attribute) new_forcings_values (cnwheat.simulation.Simulation attribute)

nfev_total (cnwheat.simulation.Simulation attribute) nitrates (cnwheat.model.Axis attribute) (cnwheat.model.PhotosyntheticOrgan attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) (cnwheat.model.Roots attribute) (cnwheat.model.Soil attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute) Nitrates_import (cnwheat.model.PhotosyntheticOrganElement attribute) NITRATES_MOLAR_MASS_N_RATIO (cnwheat.model.EcophysiologicalConstants attribute) Nstruct (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) (cnwheat.parameters.HiddenZoneInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute)

O

Organ (class in cnwheat.model) ORGANS_FLUXES (cnwheat.simulation.Simulation attribute) ORGANS_INDEXES (cnwheat.simulation.Simulation attribute) ORGANS_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) ORGANS_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute)

ORGANS_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) ORGANS_STATE (cnwheat.simulation.Simulation attribute) ORGANS_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) ORGANS_T_INDEXES (cnwheat.simulation.Simulation attribute) ORGANS_VARIABLES (in module cnwheat.converter) OUTPUTS_INDEXES (in module cnwheat.tools)

P

PARAMETERS (cnwheat.model.Axis attribute) (cnwheat.model.Chaff attribute) (cnwheat.model.ChaffElement attribute) (cnwheat.model.Grains attribute) (cnwheat.model.HiddenZone attribute) (cnwheat.model.Internode attribute) (cnwheat.model.InternodeElement attribute) (cnwheat.model.Lamina attribute) (cnwheat.model.LaminaElement attribute) (cnwheat.model.Peduncle attribute) (cnwheat.model.PeduncleElement attribute) (cnwheat.model.Phloem attribute) (cnwheat.model.PhotosyntheticOrgan attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) (cnwheat.model.Plant attribute) (cnwheat.model.Population attribute) (cnwheat.model.Roots attribute) (cnwheat.model.Sheath attribute) (cnwheat.model.SheathElement attribute) (cnwheat.model.Soil attribute) Peduncle (class in cnwheat.model) peduncle (cnwheat.model.Phytomer attribute) PEDUNCLE_ELEMENT_PARAMETERS (in module cnwheat.parameters) PEDUNCLE_PARAMETERS (in module cnwheat.parameters) PeduncleElement (class in cnwheat.model) PeduncleElementParameters (class in cnwheat.parameters) PeduncleParameters (class in cnwheat.parameters) Phloem (class in cnwheat.model) phloem (cnwheat.model.Axis attribute) PHLOEM_INIT_COMPARTMENTS (in module cnwheat.parameters) PHLOEM_PARAMETERS (in module cnwheat.parameters) PhloemInitCompartments (class in cnwheat.parameters) PhloemParameters (class in cnwheat.parameters) Photosynthesis (cnwheat.model.PhotosyntheticOrganElement attribute) photosynthesis_forcings_delta_t_ratio (cnwheat.simulation.Simulation attribute) PHOTOSYNTHETIC_ORGAN_ELEMENT_INIT_COMPARTMENTS (in module cnwheat.parameters) PHOTOSYNTHETIC_ORGAN_ELEMENT_PARAMETERS (in module cnwheat.parameters) PHOTOSYNTHETIC_ORGAN_PARAMETERS (in module cnwheat.parameters) PhotosyntheticOrgan (class in cnwheat.model) PhotosyntheticOrganElement (class in cnwheat.model) PhotosyntheticOrganElementInitCompartments (class in cnwheat.parameters) PhotosyntheticOrganElementParameters (class in cnwheat.parameters) PhotosyntheticOrganParameters (class in cnwheat.parameters)

Phytomer (class in cnwheat.model) PHYTOMER_PARAMETERS (in module cnwheat.parameters) PhytomerParameters (class in cnwheat.parameters) phytomers (cnwheat.model.Axis attribute) PHYTOMERS_FLUXES (cnwheat.simulation.Simulation attribute) PHYTOMERS_INDEXES (cnwheat.simulation.Simulation attribute) PHYTOMERS_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) PHYTOMERS_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute) PHYTOMERS_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) PHYTOMERS_STATE (cnwheat.simulation.Simulation attribute) PHYTOMERS_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) PHYTOMERS_T_INDEXES (cnwheat.simulation.Simulation attribute) PHYTOMERS_VARIABLES (in module cnwheat.converter) Plant (class in cnwheat.model) PLANT_PARAMETERS (in module cnwheat.parameters) PlantParameters (class in cnwheat.parameters) plants (cnwheat.model.Population attribute) PLANTS_FLUXES (cnwheat.simulation.Simulation attribute) PLANTS_INDEXES (cnwheat.simulation.Simulation attribute) PLANTS_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) PLANTS_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute) PLANTS_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) PLANTS_STATE (cnwheat.simulation.Simulation attribute) PLANTS_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) PLANTS_T_INDEXES (cnwheat.simulation.Simulation attribute) PLANTS_VARIABLES (in module cnwheat.converter) plot_cnwheat_ouputs() (in module cnwheat.tools) Population (class in cnwheat.model) population (cnwheat.simulation.Simulation attribute) POPULATION_PARAMETERS (in module cnwheat.parameters) PopulationParameters (class in cnwheat.parameters) previous_forcings_values (cnwheat.simulation.Simulation attribute) progress_mapping (cnwheat.tools.ProgressBar attribute) ProgressBar (class in cnwheat.tools) progressbar (cnwheat.simulation.Simulation attribute) ProgressBarError proteins (cnwheat.model.Grains attribute) (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.GrainsInitCompartments attribute) (cnwheat.parameters.HiddenZoneInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) PROTEINS_MOLAR_MASS_C_RATIO (cnwheat.model.EcophysiologicalConstants attribute) PROTEINS_MOLAR_MASS_N_RATIO (cnwheat.model.EcophysiologicalConstants attribute)

R

R_grain_growth_starch (cnwheat.model.Grains attribute) R_grain_growth_struct (cnwheat.model.Grains attribute) R_Nnit_red (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) R_Nnit_upt (cnwheat.model.Roots attribute) R_phloem_loading (cnwheat.model.PhotosyntheticOrganElement attribute) R_residual (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) RATIO_C_mstruct (cnwheat.model.EcophysiologicalConstants attribute) ratio_DZ (cnwheat.parameters.HiddenZoneInitCompartments attribute)

Regul_S_Fructan (cnwheat.model.PhotosyntheticOrganElement attribute) regul_transpiration (cnwheat.model.Roots attribute) respiration_model (cnwheat.simulation.Simulation attribute) RGR_Structure (cnwheat.model.Grains attribute) Roots (class in cnwheat.model) roots (cnwheat.model.Axis attribute) ROOTS_FORCINGS (cnwheat.simulation.Simulation attribute) ROOTS_INIT_COMPARTMENTS (in module cnwheat.parameters) ROOTS_PARAMETERS (in module cnwheat.parameters) RootsInitCompartments (class in cnwheat.parameters) RootsParameters (class in cnwheat.parameters) run() (cnwheat.simulation.Simulation method)

S

S_Amino_Acids (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) S_cytokinins (cnwheat.model.Roots attribute) S_Fructan (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) S_grain_starch (cnwheat.model.Grains attribute) S_grain_structure (cnwheat.model.Grains attribute) S_Proteins (cnwheat.model.Grains attribute) (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) S_Starch (cnwheat.model.PhotosyntheticOrganElement attribute) S_Sucrose (cnwheat.model.PhotosyntheticOrganElement attribute) senesced_mstruct (cnwheat.model.Axis attribute) (cnwheat.model.PhotosyntheticOrgan attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Phytomer attribute) (cnwheat.model.Roots attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute) senescence_forcings_delta_t_ratio (cnwheat.simulation.Simulation attribute) set_t_max() (cnwheat.tools.ProgressBar method) setup_logging() (in module cnwheat.tools) Sheath (class in cnwheat.model) sheath (cnwheat.model.Phytomer attribute) SHEATH_ELEMENT_PARAMETERS (in module cnwheat.parameters) SHEATH_PARAMETERS (in module cnwheat.parameters) SheathElement (class in cnwheat.model) SheathElementParameters (class in cnwheat.parameters) SheathParameters (class in cnwheat.parameters) show_progressbar (cnwheat.simulation.Simulation attribute) SIGMA (cnwheat.parameters.HiddenZoneParameters attribute) SIGMA_AMINO_ACIDS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) SIGMA_SUCROSE (cnwheat.parameters.PhotosyntheticOrganParameters attribute) (cnwheat.parameters.RootsParameters attribute) Simulation (class in cnwheat.simulation)

SimulationConstructionError SimulationError SimulationInitializationError SimulationRunError Soil (class in cnwheat.model) SOIL_PARAMETERS (in module cnwheat.parameters) SoilParameters (class in cnwheat.parameters) soils (cnwheat.simulation.Simulation attribute) SOILS_FLUXES (cnwheat.simulation.Simulation attribute) SOILS_INDEXES (cnwheat.simulation.Simulation attribute) SOILS_INTEGRATIVE_VARIABLES (cnwheat.simulation.Simulation attribute) SOILS_INTERMEDIATE_VARIABLES (cnwheat.simulation.Simulation attribute) SOILS_RUN_VARIABLES (cnwheat.simulation.Simulation attribute) SOILS_STATE (cnwheat.simulation.Simulation attribute) SOILS_STATE_PARAMETERS (cnwheat.simulation.Simulation attribute) SOILS_T_INDEXES (cnwheat.simulation.Simulation attribute) SOILS_VARIABLES (in module cnwheat.converter) starch (cnwheat.model.Grains attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.GrainsInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) structural_dry_mass (cnwheat.model.Grains attribute) structure (cnwheat.model.Grains attribute) (cnwheat.parameters.GrainsInitCompartments attribute) sucrose (cnwheat.model.HiddenZone attribute) (cnwheat.model.Phloem attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) (cnwheat.parameters.HiddenZoneInitCompartments attribute) (cnwheat.parameters.PhloemInitCompartments attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) (cnwheat.parameters.RootsInitCompartments attribute) sum_respi (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute) sum_respi_roots (cnwheat.parameters.AxisInitCompartments attribute) sum_respi_shoot (cnwheat.parameters.AxisInitCompartments attribute)

T

T_INDEX (cnwheat.simulation.Simulation attribute) t_max (cnwheat.tools.ProgressBar attribute) t_offset (cnwheat.simulation.Simulation attribute) time_grid (cnwheat.simulation.Simulation attribute) time_step (cnwheat.simulation.Simulation attribute) title (cnwheat.tools.ProgressBar attribute) to_dataframe() (in module cnwheat.parameters) to_dataframes() (in module cnwheat.converter) Total_Organic_Nitrogen (cnwheat.model.HiddenZone attribute) (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.model.Roots attribute)

Total_Transpiration (cnwheat.model.Axis attribute) Tr (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) Transpiration (cnwheat.model.PhotosyntheticOrganElement attribute) triosesP (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) TRIOSESP_MOLAR_MASS_C_RATIO (cnwheat.model.EcophysiologicalConstants attribute) Ts (cnwheat.model.PhotosyntheticOrganElement attribute) (cnwheat.parameters.PhotosyntheticOrganElementInitCompartments attribute) Tsoil (cnwheat.model.Soil attribute)

U

uncomplete_character (cnwheat.tools.ProgressBar attribute) Unloading_Amino_Acids (cnwheat.model.HiddenZone attribute) (cnwheat.model.Roots attribute)

Unloading_Sucrose (cnwheat.model.HiddenZone attribute) (cnwheat.model.Roots attribute) update() (cnwheat.tools.ProgressBar method) Uptake_Nitrates (cnwheat.model.Roots attribute)

V

VMAX_AMINO_ACIDS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) (cnwheat.parameters.RootsParameters attribute) VMAX_DFRUCTAN (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) VMAX_DPROTEINS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) VMAX_DPROTEINS_CYTOK (cnwheat.parameters.PhotosyntheticOrganParameters attribute) VMAX_RGR (cnwheat.parameters.GrainsParameters attribute) VMAX_S_CYTOKININS (cnwheat.parameters.RootsParameters attribute) VMAX_SFRUCTAN_POT (cnwheat.parameters.HiddenZoneParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute)

VMAX_SFRUCTAN_RELATIVE (cnwheat.parameters.HiddenZoneParameters attribute) VMAX_SPROTEINS (cnwheat.parameters.PhotosyntheticOrganParameters attribute) VMAX_SPROTEINS_DZ (cnwheat.parameters.HiddenZoneParameters attribute) VMAX_SPROTEINS_EMZ (cnwheat.parameters.HiddenZoneParameters attribute) VMAX_STARCH (cnwheat.parameters.GrainsParameters attribute) (cnwheat.parameters.PhotosyntheticOrganParameters attribute) VMAX_SUCROSE (cnwheat.parameters.PhotosyntheticOrganParameters attribute) volume (cnwheat.model.Soil attribute)